Sunplin

SUNPLIN (Simulation with Uncertainty for Phylogenetic Investigations) expands trees by inserting the provided Phylogenetic Uncertain Taxa (PUT) randomly into the partially known tree and calculates the correspoding patristic distance matrices. The results can be easily imported in a statistical software and used to conduct large scale phylogenetic comparative simulation that take uncertainty into account.

Enter phylogenetic tree in Newick format	Use sample tree ... or upload a file
Enter pairs PUT and MDCC, one per line, where PUT is the phylogenetic uncertain taxa and MDCC is the most derived consensus clade from which point the PUT will be randomly inserted	Use sample species ... or upload a file
Insertion method Node-based Branch-based	Choose the extension for the tree-file
Options Calculate distance matrices Name	Choose the extension for the distance-file
Generate Reset

Download the User Manual here.

SUNPLIN is under the terms of the Creative Commons Attibution Nocommercial 2.5 License.

The source-code is available here.